DOMAINATION: domain prediction

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For stable links, please refer to www.ibi.vu.nl/programs/ or www.ibi.vu.nl/programs/domainationwww/index.php.

Our compute cluster is temporarily unavailable due to maintenance. We expect the server to be back online in the course of next week (7-10 April). We apologise for the inconvenience.

DOMAINATION is a method to identify domains in a protein sequence from similarity searches using PSI-BLAST. The identified domains are used in individual PSI-BLAST searches to improve detection of distant homologous sequences. DOMAINATION iterates until no new domains are found. Supply a protein sequence in FASTA format or enter a UniProt/RefSeq ID. Documentation: introduction to DOMAINATION, including example output. WSDL: SOAP interface available.	Paste in a protein sequence (FASTA format only): or  upload a sequence: or  supply a UniProt/RefSeq ID: Run similarity search on found sequences Rerun query; do not use cached results E-mail address (optional):
The DOMAINATION web server was developed by Bernd Brandt.