YASPIN secondary structure prediction

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Options Help YASPIN is a HNN (Hidden Neural Network) secondary structure prediction program that uses the PSI-BLAST algorithm to produce a PSSM for the input sequence, which it then uses to perform its prediction. Reference: Lin K., Simossis V.A., Taylor W.R. and Heringa J. (2005) A Simple and Fast Secondary Structure Prediction Algorithm using Hidden Neural Networks. Bioinformatics. 21(2):152-9. Abstract

Paste in your protein sequence in FASTA format (seq size <= 4000): Help
Or Upload a FASTA file (seq size <= 4000): Help	Upload a PSSM for your sequence (if applicable): Help
Enter a name for your job: Help
Choose a database for PSI-BLAST to use: Help NR SWISSPROT PDB SCOP10 SCOP20 SCOP25 SCOP30 SCOP35 SCOP40 SCOP50 SCOP70	Choose the NN you would like to use: Help     DSSP-trained STRIDE-trained
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