 |
 |
|
||||||||||
 |
       |
||
 |
 |
|
SeRenDIP-CE Conformational Epitope prediction Resultsnew job |
In the table below you can see the SeRenDIP-CE Conformational Epitope prediction example P0DTD3 — Name: SARS-CoV-2 Uncharacterized protein 14 — UniProtKB: Y14_SARS2 . The table contains sequence position, prediction scores and classification based on the default cut-off of 0.5 (above is predicted interaction).
Download raw dataYou can download the output file and the full feature table.
Please cite:
- Qingzhen Hou1, Reza Haydarlou, Bas Stringer, Katharina Waury, Henriette Capel, Sanne Abeln, Jaap Heringa, K. Anton Feenstra SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes Bioinformatics advance 11 May 2021, doi: 10.1093/bioinformatics/btab321 1Department of Biostatistics, School of Public Health & National institute of health data science of China; Shandong 250002, P. R. China
- Qingzhen Hou1, Paul De Geest, Christian Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. SeRenDIP: remastered alignment profiles for fast and accurate predictions of PPI interface positions. Bioinformatics 35, pp 4794–4796, 2019, doi: 10.1093/bioinformatics/btz428
13BIO-BioInfo – BioModeling, BioInformatics & BioProcesses, Université Libre de Bruxelles- Qingzhen Hou, Paul De Geest, Wim F. Vranken, Jaap Heringa and K. Anton Feenstra
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx005
Color better than threshold:
Sequence Models Epitope Prediction Pos AA Model 1 Model 2 Model 3 Model 4 Model 5 Average Pred Std. Dev. Z-score x of 65 rows match filter(s) 5 C 0.638 0.642 0.588 0.628 0.562 0.612 I 0.0350 0.1759 6 Y 0.694 0.550 0.594 0.658 0.586 0.616 I 0.0583 0.2519 7 N 0.696 0.640 0.576 0.738 0.576 0.645 I 0.0721 0.7076 8 F 0.708 0.608 0.620 0.722 0.644 0.660 I 0.0517 0.9482 9 L 0.674 0.638 0.642 0.672 0.614 0.648 I 0.0252 0.7520 10 K 0.648 0.616 0.620 0.716 0.614 0.643 I 0.0432 0.6697 11 E 0.692 0.550 0.672 0.742 0.600 0.651 I 0.0762 0.8026 12 Q 0.626 0.542 0.684 0.734 0.622 0.642 I 0.0723 0.6507 13 H 0.680 0.586 0.702 0.722 0.664 0.671 I 0.0522 1.1128 14 C 0.672 0.634 0.580 0.690 0.618 0.639 I 0.0437 0.6064 15 Q 0.706 0.630 0.674 0.738 0.634 0.676 I 0.0464 1.2014 16 K 0.802 0.684 0.728 0.830 0.722 0.753 I 0.0606 2.4169 17 A 0.702 0.626 0.662 0.706 0.670 0.673 I 0.0327 1.1508 18 S 0.756 0.614 0.684 0.762 0.684 0.700 I 0.0610 1.5749 19 T 0.792 0.670 0.674 0.772 0.630 0.708 I 0.0704 1.6952 20 Q 0.782 0.612 0.678 0.746 0.612 0.686 I 0.0772 1.3534 21 K 0.746 0.658 0.708 0.796 0.684 0.718 I 0.0541 1.8661 22 G 0.694 0.676 0.628 0.696 0.642 0.667 I 0.0308 1.0558 23 A 0.702 0.616 0.610 0.654 0.606 0.638 I 0.0408 0.5874 24 E 0.728 0.636 0.630 0.734 0.608 0.667 I 0.0592 1.0558 25 A 0.648 0.656 0.614 0.724 0.664 0.661 I 0.0399 0.9609 26 A 0.642 0.652 0.638 0.694 0.620 0.649 I 0.0276 0.7710 27 V 0.642 0.602 0.594 0.696 0.566 0.620 I 0.0504 0.3088 28 K 0.648 0.642 0.674 0.650 0.614 0.646 I 0.0215 0.7140 29 P 0.640 0.664 0.632 0.704 0.700 0.668 I 0.0332 1.0685 30 L 0.558 0.626 0.604 0.634 0.618 0.608 I 0.0301 0.1189 31 L 0.552 0.610 0.582 0.630 0.606 0.596 I 0.0299 -0.0710 32 V 0.554 0.594 0.574 0.638 0.586 0.589 I 0.0312 -0.1786 33 P 0.526 0.624 0.518 0.594 0.626 0.578 I 0.0524 -0.3622 34 H 0.562 0.654 0.594 0.634 0.626 0.614 I 0.0362 0.2139 35 H 0.584 0.642 0.610 0.656 0.680 0.634 I 0.0379 0.5367 36 V 0.554 0.648 0.608 0.540 0.634 0.597 I 0.0479 -0.0583 37 V 0.534 0.586 0.634 0.584 0.668 0.601 I 0.0514 0.0113 38 A 0.578 0.614 0.624 0.578 0.642 0.607 I 0.0285 0.1063 39 T 0.548 0.602 0.650 0.580 0.662 0.608 I 0.0477 0.1252 40 V 0.556 0.604 0.644 0.588 0.652 0.609 I 0.0398 0.1316 41 Q 0.576 0.602 0.596 0.618 0.662 0.611 I 0.0323 0.1632 42 E 0.562 0.630 0.592 0.648 0.686 0.624 I 0.0483 0.3658 43 I 0.518 0.580 0.608 0.540 0.682 0.586 I 0.0642 -0.2356 44 Q 0.528 0.664 0.618 0.596 0.636 0.608 I 0.0514 0.1252 45 L 0.522 0.700 0.622 0.556 0.688 0.618 I 0.0786 0.2708 46 Q 0.460 0.666 0.626 0.574 0.632 0.592 I 0.0806 -0.1406 47 A 0.520 0.610 0.642 0.506 0.612 0.578 I 0.0609 -0.3559 48 A 0.486 0.612 0.568 0.572 0.616 0.571 I 0.0523 -0.4698 49 V 0.438 0.588 0.580 0.540 0.650 0.559 I 0.0784 -0.6534 50 G 0.444 0.554 0.608 0.524 0.574 0.541 I 0.0621 -0.9446 51 E 0.494 0.618 0.582 0.618 0.602 0.583 I 0.0518 -0.2799 52 L 0.512 0.542 0.544 0.538 0.628 0.553 I 0.0440 -0.7547 53 L 0.464 0.594 0.582 0.550 0.604 0.559 I 0.0568 -0.6597 54 L 0.476 0.548 0.520 0.472 0.572 0.518 I 0.0439 -1.3118 55 L 0.412 0.558 0.524 0.486 0.598 0.516 I 0.0712 -1.3434 56 E 0.400 0.536 0.502 0.490 0.546 0.495 NI 0.0578 -1.6726 57 W 0.418 0.554 0.478 0.452 0.552 0.491 NI 0.0606 -1.7359 58 L 0.384 0.532 0.496 0.502 0.530 0.489 NI 0.0608 -1.7676 59 A 0.444 0.504 0.536 0.440 0.522 0.489 NI 0.0446 -1.7612 60 M 0.428 0.572 0.518 0.488 0.556 0.512 I 0.0575 -1.3941 61 A 0.500 0.560 0.536 0.492 0.516 0.521 I 0.0276 -1.2611 62 V 0.516 0.516 0.510 0.496 0.552 0.518 I 0.0207 -1.3054 63 M 0.568 0.534 0.532 0.484 0.558 0.535 I 0.0325 -1.0332 64 L 0.570 0.526 0.474 0.530 0.530 0.526 I 0.0342 -1.1788 65 L 0.554 0.506 0.522 0.606 0.598 0.557 I 0.0445 -0.6851 66 L 0.540 0.552 0.478 0.496 0.538 0.521 I 0.0320 -1.2611 67 L 0.532 0.438 0.494 0.520 0.572 0.511 I 0.0497 -1.4131 68 C 0.532 0.492 0.512 0.516 0.554 0.521 I 0.0232 -1.2548 69 C 0.560 0.536 0.488 0.560 0.516 0.532 I 0.0307 -1.0839
(c) IBIVU 2026. If you are experiencing problems with the site, please contact the webmaster.