SeRenDIP PPI interface prediction example P0DTD3 — Name: SARS-CoV-2 Uncharacterized protein 14


		SeRenDIP PPI interface prediction Resultsnew job

In the table below you can see the SeRenDIP PPI interface prediction example P0DTD3 — Name: SARS-CoV-2 Uncharacterized protein 14 — UniProtKB: Y14_SARS2 . The table contains sequence position, prediction scores and classification based on the default cut-off of 0.5 (above is predicted interaction).

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Please cite:

Qingzhen Hou¹, Reza Haydarlou, Bas Stringer, Katharina Waury, Henriette Capel, Sanne Abeln, Jaap Heringa, K. Anton Feenstra SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes Bioinformatics advance 11 May 2021, doi: 10.1093/bioinformatics/btab321 ¹Department of Biostatistics, School of Public Health & National institute of health data science of China; Shandong 250002, P. R. China
Qingzhen Hou¹, Paul De Geest, Christian Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. SeRenDIP: remastered alignment profiles for fast and accurate predictions of PPI interface positions. Bioinformatics 35, pp 4794–4796, 2019, doi: 10.1093/bioinformatics/btz428
¹3BIO-BioInfo – BioModeling, BioInformatics & BioProcesses, Université Libre de Bruxelles
Qingzhen Hou, Paul De Geest, Wim F. Vranken, Jaap Heringa and K. Anton Feenstra
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx005

Color better than threshold:

Sequence Combined Prediction

Pos AA Model Pred

x of 65 rows match filter(s)

5 C 0.490 NI

6 Y 0.508 I

7 N 0.560 I

8 F 0.568 I

9 L 0.494 NI

10 K 0.484 NI

11 E 0.552 I

12 Q 0.506 I

13 H 0.580 I

14 C 0.504 I

15 Q 0.480 NI

16 K 0.538 I

17 A 0.558 I

18 S 0.522 I

19 T 0.494 NI

20 Q 0.494 NI

21 K 0.532 I

22 G 0.504 I

23 A 0.440 NI

24 E 0.474 NI

25 A 0.472 NI

26 A 0.530 I

27 V 0.494 NI

28 K 0.490 NI

29 P 0.498 NI

30 L 0.470 NI

31 L 0.502 I

32 V 0.516 I

33 P 0.516 I

34 H 0.514 I

35 H 0.530 I

36 V 0.490 NI

37 V 0.552 I

38 A 0.548 I

39 T 0.544 I

40 V 0.472 NI

41 Q 0.544 I

42 E 0.472 NI

43 I 0.486 NI

44 Q 0.468 NI

45 L 0.516 I

46 Q 0.504 I

47 A 0.514 I

48 A 0.556 I

49 V 0.492 NI

50 G 0.458 NI

51 E 0.534 I

52 L 0.546 I

53 L 0.498 NI

54 L 0.516 I

55 L 0.476 NI

56 E 0.472 NI

57 W 0.448 NI

58 L 0.428 NI

59 A 0.510 I

60 M 0.486 NI

61 A 0.510 I

62 V 0.552 I

63 M 0.534 I

64 L 0.532 I

65 L 0.520 I

66 L 0.472 NI

67 L 0.498 NI

68 C 0.490 NI

69 C 0.514 I

SeRenDIP PPI interface prediction Resultsnew job