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SeRenDIP-CE Conformational Epitope prediction Resultsnew job |
In the table below you can see the SeRenDIP-CE Conformational Epitope prediction example P0DTC7 — Name: SARS-CoV-2 Protein 7a — UniProtKB: NS7A_SARS2 . The table contains sequence position, prediction scores and classification based on the default cut-off of 0.5 (above is predicted interaction).
Download raw dataYou can download the output file and the full feature table.
Please cite:
- Qingzhen Hou1, Reza Haydarlou, Bas Stringer, Katharina Waury, Henriette Capel, Sanne Abeln, Jaap Heringa, K. Anton Feenstra SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes Bioinformatics advance 11 May 2021, doi: 10.1093/bioinformatics/btab321 1Department of Biostatistics, School of Public Health & National institute of health data science of China; Shandong 250002, P. R. China
- Qingzhen Hou1, Paul De Geest, Christian Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. SeRenDIP: remastered alignment profiles for fast and accurate predictions of PPI interface positions. Bioinformatics 35, pp 4794–4796, 2019, doi: 10.1093/bioinformatics/btz428
13BIO-BioInfo – BioModeling, BioInformatics & BioProcesses, Université Libre de Bruxelles- Qingzhen Hou, Paul De Geest, Wim F. Vranken, Jaap Heringa and K. Anton Feenstra
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx005
Color better than threshold:
Sequence Models Epitope Prediction Pos AA Model 1 Model 2 Model 3 Model 4 Model 5 Average Pred Std. Dev. Z-score x of 113 rows match filter(s) 5 L 0.484 0.590 0.566 0.568 0.592 0.560 I 0.0442 -0.0720 6 F 0.424 0.572 0.520 0.578 0.574 0.534 I 0.0657 -0.3537 7 L 0.394 0.556 0.474 0.554 0.530 0.502 I 0.0686 -0.6951 8 A 0.354 0.496 0.426 0.456 0.374 0.421 NI 0.0583 -1.5529 9 L 0.340 0.478 0.400 0.388 0.356 0.392 NI 0.0536 -1.8602 10 I 0.372 0.486 0.398 0.376 0.380 0.402 NI 0.0478 -1.7535 11 T 0.444 0.442 0.436 0.400 0.408 0.426 NI 0.0205 -1.5017 12 L 0.490 0.466 0.446 0.476 0.462 0.468 NI 0.0164 -1.0536 13 A 0.444 0.514 0.464 0.508 0.476 0.481 NI 0.0296 -0.9127 14 T 0.510 0.612 0.576 0.598 0.632 0.586 I 0.0469 0.2011 15 C 0.446 0.468 0.506 0.468 0.460 0.470 NI 0.0222 -1.0365 16 E 0.510 0.662 0.618 0.582 0.666 0.608 I 0.0645 0.4358 17 L 0.526 0.656 0.560 0.540 0.614 0.579 I 0.0544 0.1328 18 Y 0.502 0.628 0.658 0.582 0.608 0.596 I 0.0593 0.3078 19 H 0.504 0.664 0.648 0.640 0.652 0.622 I 0.0663 0.5852 20 Y 0.418 0.664 0.568 0.588 0.668 0.581 I 0.1015 0.1542 21 Q 0.492 0.644 0.630 0.616 0.656 0.608 I 0.0663 0.4358 22 E 0.640 0.698 0.700 0.684 0.712 0.687 I 0.0280 1.2808 23 C 0.586 0.626 0.564 0.562 0.644 0.596 I 0.0370 0.3163 24 V 0.518 0.592 0.590 0.496 0.560 0.551 I 0.0430 -0.1659 25 R 0.632 0.714 0.686 0.596 0.684 0.662 I 0.0475 1.0205 26 G 0.534 0.636 0.636 0.608 0.712 0.625 I 0.0640 0.6236 27 T 0.462 0.656 0.560 0.584 0.642 0.581 I 0.0774 0.1499 28 T 0.508 0.706 0.636 0.650 0.656 0.631 I 0.0738 0.6876 29 V 0.532 0.578 0.576 0.584 0.564 0.567 I 0.0208 0.0005 30 L 0.576 0.552 0.680 0.696 0.640 0.629 I 0.0631 0.6620 31 L 0.592 0.426 0.548 0.596 0.630 0.558 I 0.0795 -0.0891 32 K 0.662 0.716 0.678 0.702 0.726 0.697 I 0.0265 1.3875 33 E 0.660 0.738 0.690 0.730 0.672 0.698 I 0.0347 1.4003 34 P 0.660 0.700 0.670 0.780 0.718 0.706 I 0.0476 1.4814 35 C 0.636 0.538 0.544 0.684 0.616 0.604 I 0.0623 0.3932 36 S 0.700 0.740 0.692 0.814 0.700 0.729 I 0.0510 1.7332 37 S 0.702 0.682 0.722 0.782 0.754 0.728 I 0.0401 1.7247 38 G 0.674 0.682 0.620 0.756 0.766 0.700 I 0.0610 1.4174 39 T 0.736 0.732 0.670 0.788 0.716 0.728 I 0.0424 1.7247 40 Y 0.776 0.676 0.664 0.766 0.732 0.723 I 0.0511 1.6649 41 E 0.744 0.750 0.724 0.788 0.768 0.755 I 0.0243 2.0063 42 G 0.706 0.702 0.674 0.750 0.742 0.715 I 0.0312 1.5796 43 N 0.720 0.736 0.740 0.766 0.768 0.746 I 0.0206 1.9124 44 S 0.686 0.736 0.686 0.748 0.748 0.721 I 0.0321 1.6436 45 P 0.648 0.726 0.646 0.776 0.702 0.700 I 0.0549 1.4174 46 F 0.648 0.680 0.550 0.744 0.642 0.653 I 0.0703 0.9181 47 H 0.638 0.696 0.560 0.680 0.662 0.647 I 0.0533 0.8583 48 P 0.660 0.684 0.598 0.752 0.664 0.672 I 0.0553 1.1187 49 L 0.540 0.626 0.572 0.700 0.662 0.620 I 0.0650 0.5681 50 A 0.540 0.582 0.562 0.652 0.614 0.590 I 0.0441 0.2481 51 D 0.626 0.702 0.612 0.606 0.652 0.640 I 0.0391 0.7772 52 N 0.574 0.652 0.596 0.652 0.648 0.624 I 0.0368 0.6151 53 K 0.564 0.612 0.540 0.678 0.638 0.606 I 0.0556 0.4230 54 F 0.554 0.514 0.528 0.510 0.604 0.542 I 0.0387 -0.2641 55 A 0.470 0.548 0.524 0.514 0.580 0.527 I 0.0409 -0.4220 56 L 0.464 0.474 0.464 0.432 0.456 0.458 NI 0.0159 -1.1603 57 T 0.468 0.402 0.444 0.476 0.516 0.461 NI 0.0420 -1.1261 58 C 0.518 0.450 0.440 0.450 0.478 0.467 NI 0.0317 -1.0621 59 F 0.546 0.458 0.522 0.554 0.556 0.527 I 0.0410 -0.4220 60 S 0.574 0.528 0.570 0.552 0.534 0.552 I 0.0207 -0.1616 61 T 0.544 0.506 0.528 0.560 0.508 0.529 I 0.0232 -0.4006 62 Q 0.530 0.488 0.596 0.572 0.498 0.537 I 0.0466 -0.3195 63 F 0.522 0.470 0.524 0.522 0.544 0.516 I 0.0275 -0.5372 64 A 0.552 0.548 0.552 0.528 0.532 0.542 I 0.0115 -0.2598 65 F 0.552 0.556 0.548 0.536 0.518 0.542 I 0.0154 -0.2641 66 A 0.580 0.548 0.542 0.546 0.548 0.553 I 0.0154 -0.1488 67 C 0.552 0.560 0.566 0.570 0.528 0.555 I 0.0166 -0.1232 68 P 0.542 0.546 0.638 0.598 0.526 0.570 I 0.0466 0.0347 69 D 0.556 0.576 0.578 0.582 0.584 0.575 I 0.0112 0.0901 70 G 0.560 0.598 0.588 0.558 0.598 0.580 I 0.0200 0.1456 71 V 0.554 0.600 0.506 0.590 0.584 0.567 I 0.0381 0.0005 72 K 0.536 0.570 0.508 0.544 0.530 0.538 I 0.0225 -0.3110 73 H 0.550 0.580 0.550 0.598 0.538 0.563 I 0.0249 -0.0379 74 V 0.536 0.520 0.512 0.574 0.540 0.536 I 0.0239 -0.3238 75 Y 0.542 0.574 0.498 0.520 0.522 0.531 I 0.0286 -0.3793 76 Q 0.526 0.560 0.542 0.576 0.580 0.557 I 0.0228 -0.1062 77 L 0.572 0.568 0.540 0.558 0.532 0.554 I 0.0174 -0.1360 78 R 0.570 0.586 0.566 0.606 0.594 0.584 I 0.0166 0.1883 79 A 0.610 0.582 0.618 0.634 0.546 0.598 I 0.0346 0.3334 80 R 0.592 0.634 0.654 0.644 0.604 0.626 I 0.0265 0.6279 81 S 0.572 0.616 0.632 0.606 0.588 0.603 I 0.0235 0.3846 82 V 0.534 0.568 0.532 0.564 0.614 0.562 I 0.0333 -0.0464 83 S 0.614 0.582 0.574 0.620 0.598 0.598 I 0.0198 0.3291 84 P 0.572 0.620 0.582 0.594 0.582 0.590 I 0.0185 0.2481 85 K 0.604 0.604 0.672 0.630 0.656 0.633 I 0.0306 0.7090 86 L 0.590 0.644 0.600 0.618 0.622 0.615 I 0.0209 0.5126 87 F 0.586 0.632 0.598 0.652 0.568 0.607 I 0.0343 0.4316 88 I 0.556 0.588 0.596 0.634 0.544 0.584 I 0.0355 0.1798 89 R 0.600 0.626 0.658 0.658 0.568 0.622 I 0.0388 0.5895 90 Q 0.602 0.622 0.618 0.656 0.620 0.624 I 0.0198 0.6065 91 E 0.594 0.694 0.652 0.676 0.628 0.649 I 0.0395 0.8754 92 E 0.588 0.618 0.672 0.680 0.670 0.646 I 0.0405 0.8413 93 V 0.584 0.568 0.562 0.618 0.596 0.586 I 0.0225 0.2011 94 Q 0.614 0.636 0.596 0.656 0.634 0.627 I 0.0229 0.6449 95 E 0.668 0.660 0.664 0.668 0.726 0.677 I 0.0275 1.1784 96 L 0.560 0.620 0.564 0.644 0.604 0.598 I 0.0362 0.3377 97 Y 0.548 0.566 0.548 0.582 0.624 0.574 I 0.0315 0.0731 98 S 0.566 0.558 0.508 0.576 0.560 0.554 I 0.0264 -0.1403 99 P 0.542 0.516 0.524 0.562 0.566 0.542 I 0.0222 -0.2641 100 I 0.496 0.442 0.434 0.462 0.480 0.463 NI 0.0258 -1.1091 101 F 0.468 0.418 0.430 0.470 0.500 0.457 NI 0.0331 -1.1688 102 L 0.366 0.388 0.326 0.398 0.460 0.388 NI 0.0490 -1.9114 103 I 0.360 0.378 0.350 0.360 0.386 0.367 NI 0.0147 -2.1333 104 V 0.306 0.332 0.328 0.300 0.364 0.326 NI 0.0253 -2.5686 105 A 0.314 0.368 0.348 0.346 0.424 0.360 NI 0.0407 -2.2058 106 A 0.350 0.404 0.366 0.374 0.386 0.376 NI 0.0204 -2.0351 107 I 0.376 0.380 0.366 0.322 0.382 0.365 NI 0.0249 -2.1504 108 V 0.400 0.360 0.398 0.386 0.428 0.394 NI 0.0246 -1.8388 109 F 0.406 0.454 0.410 0.442 0.456 0.434 NI 0.0240 -1.4206 110 I 0.402 0.462 0.454 0.426 0.420 0.433 NI 0.0248 -1.4291 111 T 0.466 0.456 0.480 0.496 0.500 0.480 NI 0.0189 -0.9298 112 L 0.498 0.510 0.450 0.472 0.534 0.493 NI 0.0327 -0.7890 113 C 0.474 0.544 0.436 0.506 0.464 0.485 NI 0.0415 -0.8743 114 F 0.512 0.492 0.494 0.538 0.500 0.507 I 0.0189 -0.6353 115 T 0.528 0.536 0.566 0.544 0.524 0.540 I 0.0166 -0.2897 116 L 0.580 0.522 0.580 0.570 0.530 0.556 I 0.0282 -0.1104 117 K 0.488 0.552 0.484 0.552 0.520 0.519 I 0.0330 -0.5073
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