SeRenDIP PPI interface prediction example P0DTC6 — Name: SARS-CoV-2 Non-structural protein 6


		SeRenDIP PPI interface prediction Resultsnew job

In the table below you can see the SeRenDIP PPI interface prediction example P0DTC6 — Name: SARS-CoV-2 Non-structural protein 6 — UniProtKB: NS6_SARS2 . The table contains sequence position, prediction scores and classification based on the default cut-off of 0.5 (above is predicted interaction).

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You can download the output file and the full feature table.

Please cite:

Qingzhen Hou¹, Reza Haydarlou, Bas Stringer, Katharina Waury, Henriette Capel, Sanne Abeln, Jaap Heringa, K. Anton Feenstra SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes Bioinformatics advance 11 May 2021, doi: 10.1093/bioinformatics/btab321 ¹Department of Biostatistics, School of Public Health & National institute of health data science of China; Shandong 250002, P. R. China
Qingzhen Hou¹, Paul De Geest, Christian Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. SeRenDIP: remastered alignment profiles for fast and accurate predictions of PPI interface positions. Bioinformatics 35, pp 4794–4796, 2019, doi: 10.1093/bioinformatics/btz428
¹3BIO-BioInfo – BioModeling, BioInformatics & BioProcesses, Université Libre de Bruxelles
Qingzhen Hou, Paul De Geest, Wim F. Vranken, Jaap Heringa and K. Anton Feenstra
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx005

Color better than threshold:

Sequence Combined Prediction

Pos AA Model Pred

x of 53 rows match filter(s)

5 V 0.508 I

6 D 0.582 I

7 F 0.612 I

8 Q 0.598 I

9 V 0.612 I

10 T 0.622 I

11 I 0.562 I

12 A 0.498 NI

13 E 0.542 I

14 I 0.516 I

15 L 0.502 I

16 L 0.526 I

17 I 0.500 NI

18 I 0.546 I

19 M 0.474 NI

20 R 0.512 I

21 T 0.526 I

22 F 0.506 I

23 K 0.466 NI

24 V 0.526 I

25 S 0.496 NI

26 I 0.498 NI

27 W 0.492 NI

28 N 0.494 NI

29 L 0.492 NI

30 D 0.508 I

31 Y 0.530 I

32 I 0.496 NI

33 I 0.514 I

34 N 0.520 I

35 L 0.494 NI

36 I 0.530 I

37 I 0.544 I

38 K 0.572 I

39 N 0.612 I

40 L 0.602 I

41 S 0.554 I

42 K 0.574 I

43 S 0.564 I

44 L 0.562 I

45 T 0.520 I

46 E 0.512 I

47 N 0.504 I

48 K 0.566 I

49 Y 0.538 I

50 S 0.488 NI

51 Q 0.564 I

52 L 0.540 I

53 D 0.526 I

54 E 0.522 I

55 E 0.550 I

56 Q 0.526 I

57 P 0.544 I

SeRenDIP PPI interface prediction Resultsnew job