 |
 |
|
||||||||||
 |
       |
||
 |
 |
|
SeRenDIP PPI interface prediction Resultsnew job |
In the table below you can see the SeRenDIP PPI interface prediction example P0DTC5 — Name: SARS-CoV-2 Membrane protein — UniProtKB: VME1_SARS2 . The table contains sequence position, prediction scores and classification based on the default cut-off of 0.5 (above is predicted interaction).
Download raw dataYou can download the output file and the full feature table.
Please cite:
- Qingzhen Hou1, Reza Haydarlou, Bas Stringer, Katharina Waury, Henriette Capel, Sanne Abeln, Jaap Heringa, K. Anton Feenstra SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes Bioinformatics advance 11 May 2021, doi: 10.1093/bioinformatics/btab321 1Department of Biostatistics, School of Public Health & National institute of health data science of China; Shandong 250002, P. R. China
- Qingzhen Hou1, Paul De Geest, Christian Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. SeRenDIP: remastered alignment profiles for fast and accurate predictions of PPI interface positions. Bioinformatics 35, pp 4794–4796, 2019, doi: 10.1093/bioinformatics/btz428
13BIO-BioInfo – BioModeling, BioInformatics & BioProcesses, Université Libre de Bruxelles- Qingzhen Hou, Paul De Geest, Wim F. Vranken, Jaap Heringa and K. Anton Feenstra
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx005
Color better than threshold:
Sequence Combined Prediction Pos AA Model Pred x of 214 rows match filter(s) 5 N 0.518 I 6 G 0.502 I 7 T 0.492 NI 8 I 0.476 NI 9 T 0.520 I 10 V 0.516 I 11 E 0.378 NI 12 E 0.456 NI 13 L 0.456 NI 14 K 0.442 NI 15 K 0.440 NI 16 L 0.446 NI 17 L 0.418 NI 18 E 0.498 NI 19 Q 0.476 NI 20 W 0.500 NI 21 N 0.518 I 22 L 0.476 NI 23 V 0.456 NI 24 I 0.480 NI 25 G 0.432 NI 26 F 0.398 NI 27 L 0.384 NI 28 F 0.392 NI 29 L 0.418 NI 30 T 0.372 NI 31 W 0.370 NI 32 I 0.352 NI 33 C 0.394 NI 34 L 0.372 NI 35 L 0.424 NI 36 Q 0.454 NI 37 F 0.476 NI 38 A 0.518 I 39 Y 0.472 NI 40 A 0.500 NI 41 N 0.512 I 42 R 0.496 NI 43 N 0.464 NI 44 R 0.476 NI 45 F 0.474 NI 46 L 0.392 NI 47 Y 0.384 NI 48 I 0.336 NI 49 I 0.348 NI 50 K 0.348 NI 51 L 0.352 NI 52 I 0.392 NI 53 F 0.366 NI 54 L 0.348 NI 55 W 0.368 NI 56 L 0.372 NI 57 L 0.394 NI 58 W 0.358 NI 59 P 0.378 NI 60 V 0.378 NI 61 T 0.348 NI 62 L 0.344 NI 63 A 0.314 NI 64 C 0.330 NI 65 F 0.358 NI 66 V 0.340 NI 67 L 0.354 NI 68 A 0.440 NI 69 A 0.482 NI 70 V 0.492 NI 71 Y 0.494 NI 72 R 0.524 I 73 I 0.484 NI 74 N 0.472 NI 75 W 0.486 NI 76 I 0.454 NI 77 T 0.466 NI 78 G 0.412 NI 79 G 0.408 NI 80 I 0.346 NI 81 A 0.328 NI 82 I 0.310 NI 83 A 0.310 NI 84 M 0.306 NI 85 A 0.302 NI 86 C 0.300 NI 87 L 0.352 NI 88 V 0.348 NI 89 G 0.354 NI 90 L 0.368 NI 91 M 0.360 NI 92 W 0.332 NI 93 L 0.352 NI 94 S 0.354 NI 95 Y 0.388 NI 96 F 0.364 NI 97 I 0.460 NI 98 A 0.446 NI 99 S 0.480 NI 100 F 0.488 NI 101 R 0.534 I 102 L 0.450 NI 103 F 0.454 NI 104 A 0.554 I 105 R 0.520 I 106 T 0.550 I 107 R 0.588 I 108 S 0.612 I 109 M 0.614 I 110 W 0.604 I 111 S 0.574 I 112 F 0.550 I 113 N 0.604 I 114 P 0.558 I 115 E 0.582 I 116 T 0.534 I 117 N 0.528 I 118 I 0.424 NI 119 L 0.370 NI 120 L 0.346 NI 121 N 0.368 NI 122 V 0.270 NI 123 P 0.488 NI 124 L 0.498 NI 125 H 0.484 NI 126 G 0.444 NI 127 T 0.416 NI 128 I 0.430 NI 129 L 0.426 NI 130 T 0.430 NI 131 R 0.430 NI 132 P 0.522 I 133 L 0.506 I 134 L 0.522 I 135 E 0.464 NI 136 S 0.460 NI 137 E 0.514 I 138 L 0.514 I 139 V 0.486 NI 140 I 0.458 NI 141 G 0.460 NI 142 A 0.470 NI 143 V 0.498 NI 144 I 0.470 NI 145 L 0.516 I 146 R 0.494 NI 147 G 0.466 NI 148 H 0.500 NI 149 L 0.368 NI 150 R 0.406 NI 151 I 0.410 NI 152 A 0.474 NI 153 G 0.478 NI 154 H 0.480 NI 155 H 0.472 NI 156 L 0.392 NI 157 G 0.412 NI 158 R 0.386 NI 159 C 0.406 NI 160 D 0.360 NI 161 I 0.376 NI 162 K 0.362 NI 163 D 0.348 NI 164 L 0.358 NI 165 P 0.362 NI 166 K 0.424 NI 167 E 0.394 NI 168 I 0.438 NI 169 T 0.354 NI 170 V 0.314 NI 171 A 0.324 NI 172 T 0.474 NI 173 S 0.496 NI 174 R 0.512 I 175 T 0.496 NI 176 L 0.462 NI 177 S 0.488 NI 178 Y 0.480 NI 179 Y 0.500 NI 180 K 0.564 I 181 L 0.486 NI 182 G 0.476 NI 183 A 0.458 NI 184 S 0.402 NI 185 Q 0.440 NI 186 R 0.382 NI 187 V 0.330 NI 188 A 0.364 NI 189 G 0.346 NI 190 D 0.370 NI 191 S 0.372 NI 192 G 0.374 NI 193 F 0.368 NI 194 A 0.316 NI 195 A 0.376 NI 196 Y 0.396 NI 197 S 0.460 NI 198 R 0.416 NI 199 Y 0.490 NI 200 R 0.490 NI 201 I 0.514 I 202 G 0.496 NI 203 N 0.454 NI 204 Y 0.526 I 205 K 0.518 I 206 L 0.510 I 207 N 0.568 I 208 T 0.596 I 209 D 0.584 I 210 H 0.624 I 211 S 0.594 I 212 S 0.570 I 213 S 0.520 I 214 S 0.504 I 215 D 0.518 I 216 N 0.510 I 217 I 0.508 I 218 A 0.554 I
(c) IBIVU 2026. If you are experiencing problems with the site, please contact the webmaster.