SeRenDIP PPI interface prediction example P0DTC4 — Name: SARS-CoV-2 Envelope small membrane protein


		SeRenDIP PPI interface prediction Resultsnew job

In the table below you can see the SeRenDIP PPI interface prediction example P0DTC4 — Name: SARS-CoV-2 Envelope small membrane protein — UniProtKB: VEMP_SARS2 . The table contains sequence position, prediction scores and classification based on the default cut-off of 0.5 (above is predicted interaction).

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You can download the output file and the full feature table.

Please cite:

Qingzhen Hou¹, Reza Haydarlou, Bas Stringer, Katharina Waury, Henriette Capel, Sanne Abeln, Jaap Heringa, K. Anton Feenstra SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes Bioinformatics advance 11 May 2021, doi: 10.1093/bioinformatics/btab321 ¹Department of Biostatistics, School of Public Health & National institute of health data science of China; Shandong 250002, P. R. China
Qingzhen Hou¹, Paul De Geest, Christian Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. SeRenDIP: remastered alignment profiles for fast and accurate predictions of PPI interface positions. Bioinformatics 35, pp 4794–4796, 2019, doi: 10.1093/bioinformatics/btz428
¹3BIO-BioInfo – BioModeling, BioInformatics & BioProcesses, Université Libre de Bruxelles
Qingzhen Hou, Paul De Geest, Wim F. Vranken, Jaap Heringa and K. Anton Feenstra
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx005

Color better than threshold:

Sequence Combined Prediction

Pos AA Model Pred

x of 67 rows match filter(s)

5 V 0.540 I

6 S 0.580 I

7 E 0.562 I

8 E 0.576 I

9 T 0.572 I

10 G 0.614 I

11 T 0.568 I

12 L 0.606 I

13 I 0.636 I

14 V 0.636 I

15 N 0.596 I

16 S 0.516 I

17 V 0.512 I

18 L 0.450 NI

19 L 0.434 NI

20 F 0.424 NI

21 L 0.414 NI

22 A 0.452 NI

23 F 0.450 NI

24 V 0.426 NI

25 V 0.450 NI

26 F 0.452 NI

27 L 0.424 NI

28 L 0.454 NI

29 V 0.438 NI

30 T 0.466 NI

31 L 0.452 NI

32 A 0.452 NI

33 I 0.444 NI

34 L 0.482 NI

35 T 0.494 NI

36 A 0.484 NI

37 L 0.468 NI

38 R 0.512 I

39 L 0.498 NI

40 C 0.494 NI

41 A 0.516 I

42 Y 0.492 NI

43 C 0.450 NI

44 C 0.512 I

45 N 0.544 I

46 I 0.504 I

47 V 0.584 I

48 N 0.556 I

49 V 0.578 I

50 S 0.574 I

51 L 0.648 I

52 V 0.604 I

53 K 0.602 I

54 P 0.594 I

55 S 0.528 I

56 F 0.548 I

57 Y 0.562 I

58 V 0.548 I

59 Y 0.568 I

60 S 0.546 I

61 R 0.588 I

62 V 0.554 I

63 K 0.598 I

64 N 0.544 I

65 L 0.518 I

66 N 0.524 I

67 S 0.480 NI

68 S 0.494 NI

69 R 0.554 I

70 V 0.546 I

71 P 0.520 I

SeRenDIP PPI interface prediction Resultsnew job