Scooby-domain prediction

Please do not link this web address!
For stable links, please refer to www.ibi.vu.nl/programs/ or www.ibi.vu.nl/programs/scoobywww/index.php.

Scooby-domain (Sequence hydrophobicity predicts domains) is a method to identify globular regions in protein sequence that are suitable for structural studies. The current version is 2.0. Note however, that the JAVA applet runs version 1.0. The Scooby-domain JAVA applet (v1.0) can be used as a tool to visually identify 'foldable' regions in protein sequence. Documentation. WSDL: SOAP interface available. References: George RA, Lin K and Heringa J. (2005) Scooby-domain: prediction of globular domains in protein sequence. 2005. Nucleic Acids Research 33: W160-163. Pang CN, Lin K, Wouters MA, Heringa J, George RA. (2008) Identifying foldable regions in protein sequence from the hydrophobic signal. Nucleic Acids Research 36: 578-588.	Paste in a protein sequence or alignment in fasta format:* Or Upload a sequence: Or Supply a UniProt ID: Include your own linker annotation file: Use DomCut on first sequence only (recommended) Use DomCut on all sequences Do not use DomCut    *Note: allowed gap symbols are "." and "-". Gap symbols in a single sequence will not be deleted.
The ScoobyDo web server was developed by Richard George. Updated & maintained by Bernd Brandt.