PRC Results


		PRC Results

Distribution of hits

The graph below show the distribution of the hits over your query. The "HMM space" graph shows the hits using the coordinates from the PRC output, while the "alignment" space" graph shows the hits based on alignment coordinates. The latter graph can be different as columns present in the alignments can be absent from the Hidden Markov Model.
If you mouse over a hit its score and E-value appear; if you click on a hit you jump to the corresponding alignments.
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PRC hit table

Download: PRC scores file and PRC alignments file.

Results of search against Pfam 23.0 - July 2008 (10340 profiles):

hit (hmm2) description  simple reverse E-value
SprT-likeUncharacterized conserved protein (SprT-like): This...>>201.9 193.5 3.7e-98
DUF335Putative metallopeptidase (SprT family): This famil...>>44.2 34.4 9.7e-15
Peptidase_M76Peptidase M76 family: This is a family of metallopr...>>23.4 15.1 0.00013
WLMWLM domain: This is a predicted metallopeptidase do...>>21.0 12.4 0.0033
DUF2265Predicted aminopeptidase (DUF2265): Members of this...>>18.8 12.0 0.0052
Peptidase_M48Peptidase family M4817.2 11.2 0.015
BSPPlant Basic Secretory Protein: These basic secretor...>>17.2 10.8 0.023
Peptidase_M56BlaR1 peptidase M56: Production of beta-Lactamase a...>>17.0 10.0 0.059
Mcm10Mcm10 replication factor: Mcm10 is a eukaryotic DNA...>>19.1 9.1 0.19
Peptidase_M30Peptidase M30: This family contains the metallopept...>>17.8 8.1 0.62
PipAPipA protein: This family consists of several Salmo...>>15.7 7.7 0.97

Alignments

>Hit (#1): SprT-like Show description View alignment View HMM-Logo View TS-Logo Download

Length=192

   Score  = 193.5, Expect = 3.7e-98
   Match = 187/197 (95%), Insert = 2/197 (1%), Delete = 8/197 (4%)

          Query    1	MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM~IMMM~~~MMDD      55
          Sbjct    1	MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMDMMMMDDDMM~~      58

          Query   56	DMMMMDMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM     115
          Sbjct   59	~MMIM~MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM     115

          Query  116	MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM     175
          Sbjct  116	MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM     175

          Query  176	MMMMMMMMMMMMMMMMM                                                192
          Sbjct  176	MMMMMMMMMMMMMMMMM                                                192

Aligned alignments:

     A0BYE9_PAR   16	P-PDIFELFQFYNQYFFEGIL-.--VT---CTVKW...ST-RMTLCAgkqfflskGTCKY      63
      Consensus    1	PLPDLLELFHRFNRQVFDGKLQkLAEGQPLVEVRWatdSKGRMTRTAgkqfflsiGICRY      60
                    	++++++++++++++++++++++ ++++++++++++   +++++++++        +++++        
      Consensus    1	PLPDLLELFHRFNRQVFDGKLQkLAEGQPLVEVRWatdSKGRMTRTAgkqfflsiGICRY      60
     A0BYE9_PAR   16	P-PDIFELFQFYNQYFFEGIL-.--VT---CTVKW...ST-RMTLCAgkqfflskGTCKY      63

     A0BYE9_PAR   64	:.~-E-::::::::::::::~~:::~--..............--...--GQK.-SC....      69
      Consensus   61	:g~AKR::::::::::::::~~:::~EIiekkgpagtagscpAAshnRGGGGkKGCpeyl      98
                    	   +++                    ++                    ++ +  ++            
      Consensus   61	gAKREIiekkgpagtagscpAAshnRGG::::::::::::::~~:::~GGkK:~GCpeyl      98
     A0BYE9_PAR   64	.-E---..............--...--G::::::::::::::~~:::~QK.-:~SC....      69

     A0BYE9_PAR   70	..........TIT..LSEPLLKFR..SNDELKS......................TLLHE      93
      Consensus   99	psqaayrhhaEIRieLSEPLLKLRnyPRKDLVEvssvdgralrtassflgssvpqTLLHE     158
                    	          +++  +++++++++  +++++++                      +++++        
      Consensus   99	psqaayrhhaEIRieLSEPLLKLRnyPRKDLVEvssvdgralrtassflgssvpqTLLHE     158
     A0BYE9_PAR   70	..........TIT..LSEPLLKFR..SNDELKS......................TLLHE      93

     A0BYE9_PAR   94	MIHAYLFITk...pSEAFINE-.GHGPAFLEKMNFINQVT.--------GLELSVYHQFH     139
      Consensus  159	MIHAYLFLIcgpagERLDDRERdGHGPNFKKWMRRINKAQiKDHPRYPEGFNITVYHSFH     218
                    	+++++++++     ++++++++ +++++++++++++++++ +++++++++++++++++++        
      Consensus  159	MIHAYLFLIcgpagERLDDRERdGHGPNFKKWMRRINKAQiKDHPRYPEGFNITVYHSFH     218
     A0BYE9_PAR   94	MIHAYLFITk...pSEAFINE-.GHGPAFLEKMNFINQVT.--------GLELSVYHQFH     139

     A0BYE9_PAR  140	DE..VDRCRNHIWRCNGR-CQQK........PPFFGYVKRAI..NRPPGKTDYWFQKHQE     186
      Consensus  219	DEksVDYYRKHWWRCCGPDCGNRikratkigPPYHGRVKRAAdaNRACGPNDFWWAWHQK     278
                    	++  +++++++++++++++++++        +++++++++++  ++++++++++++++++        
      Consensus  219	DEksVDYYRKHWWRCCGPDCGNRikratkigPPYHGRVKRAAdaNRACGPNDFWWAWHQK     278
     A0BYE9_PAR  140	DE..VDRCRNHIWRCNGR-CQQK........PPFFGYVKRAI..NRPPGKTDYWFQKHQE     186

     A0BYE9_PAR  187	ECGG                                                             190
      Consensus  279	TCGG                                                             282
                    	++++                                                                
      Consensus  279	TCGG                                                             282
     A0BYE9_PAR  187	ECGG                                                             190

>Hit (#2): DUF335 Show description View alignment View HMM-Logo View TS-Logo Download

Length=155

   Score  = 34.4, Expect = 9.7e-15
   Match = 120/171 (70%), Insert = 0/171 (0%), Delete = 51/171 (30%)

          Query   31	MMMMMMDMMMMMMMMMMMDMDDDDDDDDDDDMMMMMMMMMMMMMMMMMMMMMMMMMMMMM      90
          Sbjct   22	MMMMMM~MMMMMMMMMMM~M~~~~~~~~~~~MMMMMMMMMMMMMMMMMMMMMMMMMMMMM      68

          Query   91	MMMMMMDDMM~MMMDMMMMMMMMMMMMMMMMMDDDDDDDDDDDMMMMMMMMDDMMMMMM~     148
          Sbjct   69	MMMMMM~~MMDMMM~MMMMMMMMMMMMMMMMM~~~~~~~~~~~MMMMMMMM~~MMMMMMD     112

          Query  149	~MMMMMMMDDMMM~~~MMMMMMMMMMMM~~~MMMMMMDDDDDDDDDDDMMM              192
          Sbjct  113	DMMMMMMM~~MMMDDDMMMMMMMMMMMMDDDMMMMMM~~~~~~~~~~~MMM              150

Aligned alignments:

     A0BYE9_PAR   39	TVKW...ST-RMTLCAgkqfflskGTCKY.-E---..............--...--GQK.      67
      Consensus   32	EVRWatdSKGRMTRTAgkqfflsiGICRYgAKREIiekkgpagtagscpAAshnRGGGGk      91
                    	++++   ++ ++++++        +++++  +                                    
      Consensus   22	KANY:::NL~RGRTAG::::::::GAYLQ:~K~~~::::::::::::::~~:::~~~~~:      39
     SPRT_ECOLI   37	KLSY:::TQ~RGTSAG::::::::TAWLE:~S~~~::::::::::::::~~:::~~~~~:      54

     A0BYE9_PAR   68	-SC..............TIT..LSEPLLKFR..SNDELKS....................      88
      Consensus   92	KGCpeylpsqaayrhhaEIRieLSEPLLKLRnyPRKDLVEvssvdgralrtassflgssv     151
                    	 ++              +++  +++++++++  +++++++                            
      Consensus   40	~NH::::::::::::::EIR::LNPKLLEEN::GEAFLEQ::::::::::::::::::::      60
     SPRT_ECOLI   55	~Y-::::::::::::::EIR::LNPVLLLEN::SEAFIEE::::::::::::::::::::      74

     A0BYE9_PAR   89	..TLLHEMIHAYLFITk...pSEAF~INE-.GHGPAFLEKMNFINQVT.--------GLE     131
      Consensus  152	pqTLLHEMIHAYLFLIcgpagERLD~DRERdGHGPNFKKWMRRINKAQiKDHPRYPEGFN     210
                    	  ++++++++++++++       ++ +++  +++++++++++++++++                    
      Consensus   61	::VVPHELAHLHLYQE:::::~~FGPRVK~:PHGAEWKLLMQQVFGLR:~~~~~~~~~~~      97
     SPRT_ECOLI   75	::VVPHELAHLLVWKH:::::~~FG-RVA~:PHGKEWKWMMENVLGVP:~~~~~~~~~~~     110

     A0BYE9_PAR  132	LSVYHQFHDE..VDRCRN~~HIWRCNGR-CQQ~~~K........PPFFGYVKRAI..~NR     172
      Consensus  211	ITVYHSFHDEksVDYYRK~~HWWRCCGPDCGN~~~RikratkigPPYHGRVKRAAda~NR     264
                    	++++++++    ++++++  +++++++  +++   +        +++++++++++   ++        
      Consensus   98	PCTCHQFA~~::VKSVKTKTYHYRCQC~~CGHNDFP::::::::LTRRRHNNVAKGEAEY     143
     SPRT_ECOLI  111	ARRTHQFE~~::LQSVRRNTFPYRCKC~~QEH---Q::::::::LTVRRHNRVVRGEAVY     153

     A0BYE9_PAR  173	PPGKTDYWFQKHQEECGG                                               190
      Consensus  265	ACGPNDFWWAWHQKTCGG                                               282
                    	++++           +++                                                  
      Consensus  144	RCGK~~~~~~~~~~~CRG                                               150
     SPRT_ECOLI  154	RCVH~~~~~~~~~~~CGE                                               160

>Hit (#3): Peptidase_M76 Show description View alignment View HMM-Logo View TS-Logo Download

Length=181

   Score  = 15.1, Expect = 0.00013
   Match = 26/28 (93%), Insert = 0/28 (0%), Delete = 2/28 (7%)

          Query   65	MMMMMMMMMDDMMMMMMMMMMMMMMMMM      92
          Sbjct   60	MMMMMMMMM~~MMMMMMMMMMMMMMMMM      85

Aligned alignments:

     A0BYE9_PAR   71	IT..LSEPLL:::::::::::::::KFR..SNDELKS......................T      89
      Consensus  110	IRieLSEPLL:::::::::::::::KLRnyPRKDLVEvssvdgralrtassflgssvpqT     154
                    	++  ++++++               +    +++++++                      +        
      Consensus  121	IL::LCQNRIvldkatendsivpgaR~~::NKWHLED::::::::::::::::::::::T     152
     Q4SST4_TET   93	IV::LCQNNI...............H~~::QQSHMNR::::::::::::::::::::::V     109

     A0BYE9_PAR   90	LLHEMIHAY                                                         98
      Consensus  155	LLHEMIHAY                                                        163
                    	+++++++++                                                           
      Consensus  153	LAHELVHAF                                                        161
     Q4SST4_TET  110	VTHELIHAF                                                        118

>Hit (#4): WLM Show description View alignment View HMM-Logo View TS-Logo Download

Length=252

   Score  = 12.4, Expect = 0.0033
   Match = 40/47 (85%), Insert = 0/47 (0%), Delete = 7/47 (15%)

          Query   46	MMMDMMMMDDDMMMMDMMMMMMMMMM~~MMMMMMMMMMMMMMMMMMM      90
          Sbjct   62	MMM~MMMM~~~MMMM~MMMMMMMMMMDDMMMMMMMMMMMMMMMMMMM     103

Aligned alignments:

     A0BYE9_PAR   61	CKY.-E---..............--...--GQK.-S::::::::::::::::::C.....      69
      Consensus   58	CRYgAKREIiekkgpagtagscpAAshnRGGGGkKG::::::::::::::::::Cpeylp      99
                    	+++  ++++                    ++++  +                  +             
      Consensus   77	RLL:~GLNV::::::::::::::~~:::~NKGE:~KgmiwhvqavvvysltfqsI:::::     107
     Q8IJV0_PLA   61	-LL:~GLNI::::::::::::::~~:::~VKKS:~E..................I:::::      72

     A0BYE9_PAR   70	.........TIT..LSEPL~~LKFR..SNDELKS......................TLLH      92
      Consensus  100	sqaayrhhaEIRieLSEPL~~LKLRnyPRKDLVEvssvdgralrtassflgssvpqTLLH     157
                    	         +++  +++++  ++++  +++++++                      ++++        
      Consensus  108	:::::::::ELR::LRTDSDDKGFL::PYESIMG::::::::::::::::::::::TMLH     132
     Q8IJV0_PLA   73	:::::::::KIR::LRKTKG-GEIF::HFNDIMG::::::::::::::::::::::TLLH      96

     A0BYE9_PAR   93	EMIH                                                              96
      Consensus  158	EMIH                                                             161
                    	++++                                                                
      Consensus  133	ELAH                                                             136
     Q8IJV0_PLA   97	ELVH                                                             100

>Hit (#5): DUF2265 Show description View alignment View HMM-Logo View TS-Logo Download

Length=351

   Score  = 12.0, Expect = 0.0052
   Match = 37/40 (92%), Insert = 0/40 (0%), Delete = 3/40 (8%)

          Query   66	MMMMMMMMDDMMMMMMMMMMMMMMMMMMMMMMMMMMMMDM     105
          Sbjct  159	MMMMMMMM~~MMMMMMMMMMMMMMMMMMMMMMMMMMMM~M     195

Aligned alignments:

     A0BYE9_PAR   72	T..LSEPLL:KFR..SNDELKS......................TLLHEMIHAYLFITk.     103
      Consensus  111	RieLSEPLL:KLRnyPRKDLVEvssvdgralrtassflgssvpqTLLHEMIHAYLFLIcg     169
                    	+  ++++++ +    +++++++                      ++++++++++++++          
      Consensus  164	L::LNTFIRdW~~::PDGELAR::::::::::::::::::::::LIFHELAHQVVYVK::     193
     Q0VRR5_ALC  161	L::TTPMIQ.R~~::SKPSLAE::::::::::::::::::::::LLIHELAHRKLYIK::     189

     A0BYE9_PAR  104	..pSEAFINE-.G                                                    112
      Consensus  170	pagERLDDRERdG                                                    182
                    	   +++++++  +                                                       
      Consensus  194	:::GDTAFNE~:S                                                    201
     Q0VRR5_ALC  190	:::GDTRFNE~:S                                                    197

>Hit (#6): Peptidase_M48 Show description View alignment View HMM-Logo View TS-Logo Download

Length=233

   Score  = 11.2, Expect = 0.015
   Match = 28/31 (90%), Insert = 0/31 (0%), Delete = 3/31 (10%)

          Query   65	MMMMMMMM~~MM~MMMMMMMMMMMMMMMMMM      92
          Sbjct   41	MMMMMMMMDDMMDMMMMMMMMMMMMMMMMMM      71

Aligned alignments:

     A0BYE9_PAR   71	IT..LSEPLL~~KF:::::::::::::::::::::::::::::::::::::~R..SNDEL      86
      Consensus  110	IRieLSEPLL~~KL:::::::::::::::::::::::::::::::::::::~RnyPRKDL     129
                    	++  ++++++  ++                                      +  +++++        
      Consensus   42	VV::VTTGLLDKLAysvlnkdiqedsgmeprneeegnseeikakvknkkqgCL::TEDEL      97
     O04602_ARA  182	IV::LYDTLI--QQ.....................................CK::NEDEI     198

     A0BYE9_PAR   87	KS......................TLLHEMIHAY                                98
      Consensus  130	VEvssvdgralrtassflgssvpqTLLHEMIHAY                               163
                    	++                      ++++++++++                                  
      Consensus   98	AAlrf:::::::::::::::::::VLGHEIGHIK                               112
     O04602_ARA  199	VA...:::::::::::::::::::VIAHELGHWK                               210

>Hit (#7): BSP Show description View alignment View HMM-Logo View TS-Logo Download

Length=249

   Score  = 10.8, Expect = 0.023
   Match = 36/45 (80%), Insert = 0/45 (0%), Delete = 9/45 (20%)

          Query   58	MMMDMMMMMMMMMMMMMMMM~~~~~~~~MMMMMMMMMMMMMMMMM      94
          Sbjct   93	MMM~MMMMMMMMMMMMMMMMDDDDDDDDMMMMMMMMMMMMMMMMM     136

Aligned alignments:

     A0BYE9_PAR   65	GQK.-SC..............TIT..LSEPLLKFR..SN~::::~~~~~~~:DELKS...      88
      Consensus   88	GGGkKGCpeylpsqaayrhhaEIRieLSEPLLKLRnyPR~::::~~~~~~~:KDLVEvss     134
                    	+++  ++              +++  +++++++++  ++             +++++           
      Consensus  148	DDD:~HN::::::::::::::EIH::LSARYVAGI::SAEvrkgPGDVKLAtAEVTG:::     184
     Q9FWU3_ORY  125	---:~-D::::::::::::::GIH::LSARYVGGY::SAA....-GDVR--.AEVTG:::     149

     A0BYE9_PAR   89	...................TLLHEMIHAYLF                                  100
      Consensus  135	vdgralrtassflgssvpqTLLHEMIHAYLF                                  165
                    	                   ++++++++++++                                     
      Consensus  185	:::::::::::::::::::VLYHELVHVWQW                                  196
     Q9FWU3_ORY  150	:::::::::::::::::::VLYHEATHVWQW                                  161

>Hit (#8): Peptidase_M56 Show description View alignment View HMM-Logo View TS-Logo Download

Length=97

   Score  = 10.0, Expect = 0.059
   Match = 33/34 (97%), Insert = 0/34 (0%), Delete = 1/34 (3%)

          Query   58	MMMDMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM      91
          Sbjct    5	MMM~MMMMMMMMMMMMMMMMMMMMMMMMMMMMMM      37

Aligned alignments:

     A0BYE9_PAR   65	GQK.-SC..............TIT..LSEPLLKFR..SNDELKS................      88
      Consensus   88	GGGkKGCpeylpsqaayrhhaEIRieLSEPLLKLRnyPRKDLVEvssvdgralrtassfl     147
                    	+++  ++              +++  +++++++++  +++++++                        
      Consensus    5	GLW:~KP::::::::::::::RIV::LPADFDTRY::SDEERDY::::::::::::::::      28
     Q9K4N2_STA  174	WYG:~KY::::::::::::::IIL::IPSSYFKSV::IDKRLKY::::::::::::::::     197

     A0BYE9_PAR   89	......TLLHEMIHA                                                   97
      Consensus  148	gssvpqTLLHEMIHA                                                  162
                    	      +++++++++                                                     
      Consensus   29	::::::ILAHELAHL                                                   37
     Q9K4N2_STA  198	::::::IILHEYAHA                                                  206

>Hit (#9): Mcm10 Show description View alignment View HMM-Logo View TS-Logo Download

Length=378

   Score  = 9.1, Expect = 0.19
   Match = 46/52 (88%), Insert = 0/52 (0%), Delete = 6/52 (12%)

          Query  133	MMMMMMMMDDMMMMMMMMMMMMMDDMMMMMMMMMMMMMMMMMMMMMDDMMMM     184
          Sbjct  302	MMMMMMMM~~MMMMMMMMMMMMM~~MMMMMMMMMMMMMMMMMMMMM~~MMMM     347

Aligned alignments:

     A0BYE9_PAR  132	LSVYHQFHDE..VDRCRNHIWRCNGR-CQQK........PPFFGYVKRAI..NRPPGKTD     178
      Consensus  211	ITVYHSFHDEksVDYYRKHWWRCCGPDCGNRikratkigPPYHGRVKRAAdaNRACGPND     270
                    	++++++++    +++++++++++++  ++++        +++++++++++  ++++++          
      Consensus  307	VEENHDLH~~::WHDAVKRFFKCPD~~CGNR::::::::TISLDRLPKKH::CSHCGL~~     348
     MCM10_DANR  756	VEEKHDYH~~::WHDAVKRFFKCP-~~CGQR::::::::KICLARMPHGA::CSHCGL~~     796

     A0BYE9_PAR  179	YWFQ                                                             182
      Consensus  271	FWWA                                                             274
                    	++++                                                                
      Consensus  349	FKWE                                                             352
     MCM10_DANR  797	FKWE                                                             800

>Hit (#10): Peptidase_M30 Show description View alignment View HMM-Logo View TS-Logo Download

Length=419

   Score  = 8.1, Expect = 0.62
   Match = 40/43 (93%), Insert = 0/43 (0%), Delete = 3/43 (7%)

          Query   78	MMMMMMMMMMMMMMMMMMMDDMMMMMDMMMMMMMMMMMMMMMM     120
          Sbjct  152	MMMMMMMMMMMMMMMMMMM~~MMMMM~MMMMMMMMMMMMMMMM     191

Aligned alignments:

     A0BYE9_PAR   84	DELKS......................TLLHEMIHAYLFITk...pSEAFINE-.GHGPA     116
      Consensus  127	KDLVEvssvdgralrtassflgssvpqTLLHEMIHAYLFLIcgpagERLDDRERdGHGPN     186
                    	+++++                      ++++++++++++++       +++++  +++++        
      Consensus  152	NQVLS::::::::::::::::::::::TMAHEFMHMQNFYR:::::~~RGVLM~:GAQYA     180
     A0G8I2_9BU  345	NQMLT::::::::::::::::::::::TMAHESMHMQNFYR:::::~~RSVQM~:GAQYA     373

     A0BYE9_PAR  117	FLEKMNFINQV                                                      127
      Consensus  187	FKKWMRRINKA                                                      197
                    	+++++++++++                                                         
      Consensus  181	FDTWLEEMTAM                                                      191
     A0G8I2_9BU  374	FEPWLEEMTAM                                                      384

>Hit (#11): PipA Show description View alignment View HMM-Logo View TS-Logo Download

Length=228

   Score  = 7.7, Expect = 0.97
   Match = 29/31 (94%), Insert = 0/31 (0%), Delete = 2/31 (6%)

          Query   79	MMMMMMMMMMMMMMMMMMDMMMMMMDMMMMM     109
          Sbjct  175	MMMMMMMMMMMMMMMMMM~MMMMMM~MMMMM     203

Aligned alignments:

     A0BYE9_PAR   85	ELKS......................TLLHEMIHAYLFITk...pSEAFINE-.GHGPA     116
      Consensus  128	DLVEvssvdgralrtassflgssvpqTLLHEMIHAYLFLIcgpagERLDDRERdGHGPN     186
                    	++++                      ++++++++++++++      ++++++  +++++        
      Consensus  175	DTKR::::::::::::::::::::::SFIHEVVHALTHLQ:::::~DKEDNH~:PRGPV     203
     Q9MBM0_9VI  175	DTTR::::::::::::::::::::::SFIHEVVHALTHLQ:::::~DKEDSN~:PRGPV     203