Generated on Tue 27 Mar 2007 15:08 by SeqHarm version 1.1
from the Sequence Harmony Webserver at http://www.ibi.vu.nl/programs/seqharmwww/
Please cite:
Walter Pirovano*, K. Anton Feenstra* and Jaap Heringa
"Sequence Comparison by Sequence Harmony Identifies Subtype Specific Functional Sites"
Nucl. Acids Res., 2006, Vol. 34, No. 22 6540-6548
* joint first authors.
Found reference sequence 'Aox1_Saur_gu/1-349', offset=1.
Group A: 24 sequences, length 366
Sequences: Aox1_Glyc_ma/1-321, Aox1_Nico_at/1-353, Aox1_Saur_gu/1-349, Aox1_Sola_tu/1-344, Aox1_Vign_un/1-316, Aox1a_Arab_th/1-354, Aox1a_Lyco_es/1-358, Aox1a_Nico_ta/1-353, Aox1a_Oryz_sa/1-332, Aox1a_Sacc_of/1-331, Aox1a_Trit_ae/1-328, Aox1a_Zea_may/1-329, Aox1b_Arab_th/1-325, Aox1b_Lyco_es/1-318, Aox1b_Nico_ta/1-297, Aox1b_Oryz_sa/1-335, Aox1b_Sacc_of/1-285, Aox1b_Zea_may/1-332, Aox1c_Arab_th/1-329, Aox1c_Oryz_sa/1-345, Aox1c_Sacc_of/1-239, Aox1c_Trit_ae/1-347, Aox1c_Zea_may/1-347, Aox1d_Sacc_of/1-286
Group B: 7 sequences, length 366
Sequences: Aox2_Arab_th/1-353, Aox2_Cucu_sa/1-346, Aox2_Mang_in/1-274, Aox2a_Glyc_ma/1-333, Aox2a_Vign_un/1-329, Aox2b_Glyc_ma/1-326, Aox2b_Vign_un/1-326
Cutoff: 0.2. Archive of all output files
Aligned chains from AOX_SwissMODEL_em.pdb or together with whole alignment
Selected 17 positions below cutoff (0.2)
Image generated by pymol from SH_AOX_SwissMODEL_em.pdb pdb file with '1-SH' as B-factors and using display.pml pymol script:
DeLano, W.L. The PyMOL Molecular Graphics System (2002) DeLano Scientific, Palo Alto, CA, USA.www.pymol.org
Raw Table
Selected 17 positions below cutoff (0.2)
| SH: |
0.00 |
0.04 |
0.08 |
0.12 |
0.16 |
0.20 |
0.36 |
0.52 |
0.68 |
0.84 |
1.00 |
|---|
| Position |
Entropy |
SH |
Rnk |
Consensus |
|---|
| Ali |
Ref |
A |
B |
AB |
rel. |
|
|
A |
B |
|---|
| 245 |
A228 |
1.06 |
0.00 |
1.59 |
1.26 |
0.00 |
2 |
Astm |
V |
| 216 |
R199 |
0.00 |
0.00 |
0.77 |
1.26 |
0.00 |
1 |
R |
K |
| 241 |
F224 |
0.00 |
0.00 |
0.77 |
1.26 |
0.00 |
1 |
F |
M |
| 141 |
R124 |
0.00 |
0.00 |
0.77 |
1.26 |
0.00 |
1 |
R |
M |
| 253 |
A236 |
0.00 |
0.00 |
0.77 |
1.26 |
0.00 |
1 |
A |
L |
| 266 |
Y249 |
0.00 |
0.00 |
0.77 |
1.26 |
0.00 |
1 |
Y |
F |
| 136 |
R119 |
0.74 |
0.00 |
1.34 |
1.26 |
0.00 |
1 |
Kr |
P |
| 269 |
G252 |
1.06 |
1.38 |
1.90 |
1.26 |
0.00 |
1 |
Gat |
Lfc |
| 354 |
L337 |
2.05 |
0.00 |
2.36 |
1.26 |
0.00 |
1 |
Mqrhl |
K |
| 122 |
P107 |
1.36 |
0.59 |
1.89 |
1.17 |
0.07 |
2 |
Pqat- |
Rt |
| 244 |
V227 |
0.25 |
0.00 |
0.82 |
1.10 |
0.13 |
2 |
Vl |
L |
| 170 |
R153 |
0.90 |
0.00 |
1.33 |
1.10 |
0.13 |
1 |
Wlry |
R |
| 301 |
N284 |
1.67 |
1.15 |
2.20 |
1.07 |
0.15 |
1 |
AKnd |
Sen |
| 55 |
Q48 |
3.13 |
2.52 |
3.64 |
1.07 |
0.15 |
1 |
V-armlpqstw |
Fcghy- |
| 147 |
Q130 |
2.03 |
1.45 |
2.50 |
1.04 |
0.17 |
1 |
KTesqr |
HRq |
| 101 |
V86 |
2.73 |
1.38 |
3.02 |
1.03 |
0.18 |
1 |
AESvg-kt |
Knt |
| 121 |
P106 |
2.67 |
1.66 |
3.07 |
1.02 |
0.20 |
2 |
EPQdkav- |
Sety |