Sequence Harmony for 'example.fa'
Generated on Wed 18 Oct 2006 11:19 by CalculateSH version 0.1b
Please cite:
Walter Pirovano, K. Anton Feenstra and Jaap Heringa
"Sequence Comparison by Sequence Harmony Identifies Subtype Specific Functional Sites"
Submitted (2006)
Group A: 4 sequences, length 8
Sequences: A1, A2, A3, A4
Group B: 6 sequences, length 8
Sequences: B1, B2, B3, B4, B5, B6
Raw Table
Results
| Pos |
Entropy |
Seq. |
|
Consensus |
| Ali |
A |
B |
AB |
rel. |
Harm. |
Rnk |
A |
B |
| 1 |
0.00 |
0.00 |
0.97 |
1.03 |
0.00 |
0 |
R |
H |
| 2 |
0.00 |
1.46 |
1.85 |
1.03 |
0.00 |
2 |
E |
NSt |
| 3 |
1.00 |
1.58 |
2.32 |
1.03 |
0.00 |
2 |
AL |
FMV |
| 4 |
0.00 |
0.65 |
1.00 |
0.67 |
0.35 |
0 |
A |
Fa |
| 5 |
0.00 |
0.92 |
0.97 |
0.47 |
0.54 |
0 |
A |
Fa |
| 6 |
1.50 |
0.92 |
1.36 |
0.22 |
0.79 |
0 |
Fay |
Yf |
| 7 |
1.00 |
1.00 |
1.00 |
0.00 |
1.00 |
0 |
KR |
KR |
| 8 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
0 |
K |
K |
| Avg |
0.44 |
0.82 |
1.18 |
0.56 |
0.46 |