BICEP Results

Below, the heat capacity (baseline) equation and graph is shown for your protein structure. Next, the Hydrophobic Surface Area (HSA) is visualized for your protein. All graphs and DSSP output can be downloaded below.

For general information about BICEP, see the documentation, including the calculated equation.

Heat capacity calculations

Below the baseline equation, hydrophobic surface area (HSA) and molecular weight are given:

• Equation obtained for 2pdd with chain(s) A.
• Hydrophobic Surface Area based method: C = 107.68±18.9 · (273.15 - T) + 6000±1353
• Freire baseline equation: C = 30.69±13 · (273.15 - T) + 6060±540
• Calculated Hydrophobic Surface Area: 1196.00 Ų
• Calculated molecular weight: 4580.51 u

If you have selected the option to include Freire's baseline, it is included in the above graph. If you have uploaded experimental data, it is also shown. One and two times the standard deviation are plotted with a different opacity in the graph.

Protein structure views

Visualisation of your structure. Hydrophobic amino acids are coloured in red and the remaining in blue. The hydrophic amino acids are: Ala, Phe, Cys, Leu, Ile, Trp, Val, Met, and Tyr.

You can also choose to open the structure in Jmol and view the structure interactively.

2pdd_A: viewing angle 0°

2pdd_A: viewing angle 120°

2pdd_A: viewing angle 240°

 

[Note: This is the HTML5 JSmol applet]

Downloads

• Heat capacity figure in PDF format
• All figures in PNG format
• DSSP output file
• DSSP error file